phospho.ELM Blast Search

o Phospho.ELM related links
  • ELM - Resource for prediction functional sites in eukaryotic proteins
  • NetPhos - Prediction of Ser, Thr and Tyr phosphorylation sites using neural network
  • DISPHOS 1.3 - DISPHOS computationally predicts serine, threonine and tyrosine phosphorylation sites in proteins.
  • Scansite - Searches for phosphorylation sites and motifs that bind to domains such as SH2, 14-3-3 or PDZ
  • Kinase Sequence Database - Collection of protein kinase sequences grouped into families by homology of their catalytic domains
  • PREDIKIN - A computer program that can be used to predict substrates for serine/threonine protein kinases
  • NetworKIN - Systematic discovery of in vivo phosphorylation networks
  • GPS - Group-based phosphorylation scoring methods
  • RLIMS-P - Rule-based LIterature Mining System for Protein Phosphorylation
  • PhosphoregDB - The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases
  • PHOSIDA - Phosphorylation data from Mathias Mann's group

o Protein architecture links
  • UniPROT - A curated protein sequence database
  • SMART - Protein domain prediction (HMMs) and annotation
  • Phospho3D - A database of three-dimensional structures of protein phosphorylation sites
  • EBI-MSD - EBI Macromolecular Structure Database

o Protein interaction links
  • MINT - Molecular interaction database
  • DIP - Database of interacting proteins
  • STRING - Functional protein association networks
  • Reactome - Curated knowledgebase of biological pathways
  • Biocarta - Charting pathways of life

o Other interesting links
  • GO - Gene Ontology - dynamic controlled volcabulary for gene and protein roles in cells
  • GlobPlot - predictor of protein disorder and globularity
  • DisEMBL - protein disorder predictor